9RQS | pdb_00009rqs

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4QHD

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.15 M ammonium sulfate, 0.1 M Na HEPES pH 7, 20% w/v PEG 4000

Crystal Properties
Matthews coefficient	Solvent content
2.28	46.14

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2024-03-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.90931	Diamond	I03

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.7	35.85	99.3	0.999	12.7	6.8		38179

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.7	1.73			0.876	1.3

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.7	35.838	38177	1844	99.249	0.194	0.1925	0.1979	0.2279	0.233	31.325

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.452		-1.944	2.152		-0.188

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.811
r_dihedral_angle_3_deg	13.621
r_dihedral_angle_2_deg	8.301
r_dihedral_angle_1_deg	7.134
r_lrange_it	6.654
r_lrange_other	6.626
r_scangle_it	4.198
r_scangle_other	4.197
r_scbond_it	2.687
r_scbond_other	2.686

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.811
r_dihedral_angle_3_deg	13.621
r_dihedral_angle_2_deg	8.301
r_dihedral_angle_1_deg	7.134
r_lrange_it	6.654
r_lrange_other	6.626
r_scangle_it	4.198
r_scangle_other	4.197
r_scbond_it	2.687
r_scbond_other	2.686
r_mcangle_it	2.088
r_mcangle_other	2.088
r_angle_refined_deg	1.706
r_mcbond_it	1.304
r_mcbond_other	1.302
r_dihedral_angle_other_2_deg	0.978
r_angle_other_deg	0.535
r_symmetry_nbd_refined	0.244
r_nbd_refined	0.24
r_symmetry_xyhbond_nbd_refined	0.221
r_nbd_other	0.218
r_symmetry_nbd_other	0.195
r_nbtor_refined	0.193
r_xyhbond_nbd_refined	0.145
r_symmetry_nbtor_other	0.083
r_chiral_restr	0.079
r_gen_planes_refined	0.009
r_bond_refined_d	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2123
Nucleic Acid Atoms	485
Solvent Atoms	194
Heterogen Atoms

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.