PIN1 WW Domain Binding Mode with SPY-tide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY1000 uM Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (PIN1) WW Domain bound to epistatic SPY-tide, 2000 uM SPY-tide SPYpSPFPE, 100 mM sodium chloride, 50 mM sodium phosphate, 10 % [U-99% 2H] D2O90% H2O/10% D2O200 mM71 atm298Bruker AVANCE 600
22D 1H-13C HSQC1000 uM Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (PIN1) WW Domain bound to epistatic SPY-tide, 2000 uM SPY-tide SPYpSPFPE, 100 mM sodium chloride, 50 mM sodium phosphate, 10 % [U-99% 2H] D2O90% H2O/10% D2O200 mM71 atm298Bruker AVANCE 600
32D 1H-1H TOCSY1000 uM Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (PIN1) WW Domain bound to epistatic SPY-tide, 2000 uM SPY-tide SPYpSPFPE, 100 mM sodium chloride, 50 mM sodium phosphate, 10 % [U-99% 2H] D2O90% H2O/10% D2O200 mM71 atm298Bruker AVANCE 600
42D DQF-COSY1000 uM Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (PIN1) WW Domain bound to epistatic SPY-tide, 2000 uM SPY-tide SPYpSPFPE, 100 mM sodium chloride, 50 mM sodium phosphate, 10 % [U-99% 2H] D2O90% H2O/10% D2O200 mM71 atm298Bruker AVANCE 600
52D 1H-15N HSQC1000 uM Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (PIN1) WW Domain bound to epistatic SPY-tide, 2000 uM SPY-tide SPYpSPFPE, 100 mM sodium chloride, 50 mM sodium phosphate, 10 % [U-99% 2H] D2O90% H2O/10% D2O200 mM71 atm298Bruker AVANCE 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealingARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number25
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1peak pickingCcpNmr Analysis3.2.10Skinner, S.P., Fogh, R.H., Boucher, W., Ragan, T.J., Mureddu, L.G., and Vuister, G.W
2collectionTopSpin3.1Bruker Biospin
4chemical shift assignmentCcpNmr Analysis3.2.10Skinner, S.P., Fogh, R.H., Boucher, W., Ragan, T.J., Mureddu, L.G., and Vuister, G.W
5structure calculationARIA2.3Linge, O'Donoghue and Nilges