☰ Navigation Tabs
Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0027808
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8PN6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 30% w/v PEG 2000, 0.2M Ammonium sulfate, 0.1M acetate (pH 4.8)
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.218 α = 90 b = 42.218 β = 90 c = 218.039 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2025-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9212 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 43.61 100 1 24.6 1.8 33083
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.836 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.5 42.254 32973 1586 99.945 0.2 0.1983 0.195 0.2277 0.2268 30.401
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.766 0.766 -1.532
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.55 r_dihedral_angle_4_deg 19.929 r_dihedral_angle_3_deg 13.435 r_dihedral_angle_1_deg 7.811 r_lrange_other 4.846 r_lrange_it 4.82 r_scangle_it 2.914 r_scangle_other 2.897 r_mcangle_it 1.989 r_mcangle_other 1.988
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.55 r_dihedral_angle_4_deg 19.929 r_dihedral_angle_3_deg 13.435 r_dihedral_angle_1_deg 7.811 r_lrange_other 4.846 r_lrange_it 4.82 r_scangle_it 2.914 r_scangle_other 2.897 r_mcangle_it 1.989 r_mcangle_other 1.988 r_scbond_it 1.917 r_scbond_other 1.907 r_angle_refined_deg 1.773 r_angle_other_deg 1.451 r_mcbond_it 1.316 r_mcbond_other 1.31 r_symmetry_xyhbond_nbd_refined 0.643 r_symmetry_nbd_refined 0.229 r_nbd_other 0.218 r_nbd_refined 0.193 r_symmetry_nbd_other 0.186 r_nbtor_refined 0.164 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.083 r_symmetry_nbtor_other 0.078 r_bond_refined_d 0.012 r_chiral_restr_other 0.011 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1444 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling PHASER phasing