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Leishmania major N-myristoyltransferase in complex with azetidinopyrimidine inhibitor IMP-180
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 30% PEG 1500, 0.2 M NaCl, 0.1 M Na cacodylate
Crystal Properties Matthews coefficient Solvent content 2.23 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.619 α = 90 b = 90.922 β = 111.876 c = 53.08 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2013-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 45.51 96.6 0.06 9.5 4.3 99151
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 93.9 0.82 1.7 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.3 45.502 99044 4956 96.363 0.17 0.1689 0.1691 0.1989 0.1992 18.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.121 -0.467 0.286 -0.024
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.052 r_dihedral_angle_3_deg 13.018 r_dihedral_angle_2_deg 9.107 r_dihedral_angle_1_deg 6.324 r_lrange_it 5.782 r_scangle_it 3.961 r_mcangle_it 2.765 r_scbond_it 2.677 r_angle_refined_deg 2.201 r_mcbond_it 1.809
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.052 r_dihedral_angle_3_deg 13.018 r_dihedral_angle_2_deg 9.107 r_dihedral_angle_1_deg 6.324 r_lrange_it 5.782 r_scangle_it 3.961 r_mcangle_it 2.765 r_scbond_it 2.677 r_angle_refined_deg 2.201 r_mcbond_it 1.809 r_nbtor_refined 0.32 r_symmetry_nbd_refined 0.248 r_nbd_refined 0.21 r_symmetry_xyhbond_nbd_refined 0.172 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.13 r_bond_refined_d 0.012 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3354 Nucleic Acid Atoms Solvent Atoms 541 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing