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Leishmania major N-myristoyltransferase in complex with azetidinopyrimidine inhibitor IMP-819
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 30% PEG 1500, 0.2 M NaCl, 0.1 M Na cacodylate
Crystal Properties Matthews coefficient Solvent content 2.23 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.408 α = 90 b = 90.794 β = 111.721 c = 52.945 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.920 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 49.2 93.7 0.052 12.7 4.1 95383
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 65.5 0.43 2.3 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.3 49.186 95352 4775 93.451 0.163 0.1619 0.1619 0.1923 0.1924 14.778
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.338 -0.169 -0.139 -0.048
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.717 r_dihedral_angle_3_deg 12.35 r_dihedral_angle_1_deg 6.688 r_dihedral_angle_2_deg 5.574 r_lrange_it 5.022 r_scangle_it 3.123 r_angle_refined_deg 2.255 r_mcangle_it 2.221 r_scbond_it 2.14 r_mcbond_it 1.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.717 r_dihedral_angle_3_deg 12.35 r_dihedral_angle_1_deg 6.688 r_dihedral_angle_2_deg 5.574 r_lrange_it 5.022 r_scangle_it 3.123 r_angle_refined_deg 2.255 r_mcangle_it 2.221 r_scbond_it 2.14 r_mcbond_it 1.48 r_nbtor_refined 0.314 r_nbd_refined 0.208 r_symmetry_xyhbond_nbd_refined 0.199 r_symmetry_nbd_refined 0.16 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.127 r_bond_refined_d 0.013 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3354 Nucleic Acid Atoms Solvent Atoms 673 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing