9RIA | pdb_00009ria

Cryo-EM structure of tomato NRC3-AVRcap1b complex


ELECTRON MICROSCOPY

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
in silico modelAlphaFold 
Sample
SlNRC3-AVRcap1b complex
Sample Components
SlNRC3
AVRcap1b
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentLEICA EM GP
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles267047
Reported Resolution (Å)3.2
Resolution MethodOTHER
Other Detailscomposite map
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1
Refinement SpaceREAL
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)50.13
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)600
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification105000
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcryoSPARC4.6.2
IMAGE ACQUISITIONEPU3.4
CTF CORRECTIONcryoSPARC4.6.2
MODEL FITTINGCoot0.9.8.95
MODEL FITTINGUCSF ChimeraX1.8
INITIAL EULER ASSIGNMENTcryoSPARC4.6.2
FINAL EULER ASSIGNMENTcryoSPARC4.6.2
CLASSIFICATIONcryoSPARC4.6.2
RECONSTRUCTIONcryoSPARC4.6.2
MODEL REFINEMENTPHENIX1.21.2
MODEL REFINEMENTISOLDE1.8
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION3531889