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Pyrin B30.2 domain, FMF mutation delta-Ile692
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WL1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Tris-AcOH, pH 7.6; 0.2 M KSCN; 30 % (w/v) PEG 2k MME
Crystal Properties Matthews coefficient Solvent content 2.19 43.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.54 α = 90 b = 59.54 β = 90 c = 179.414 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2009-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 44.85 100 0.13 0.133 0.028 0.999 15 20.7 35210
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.44 1.46 100 3.125 3.226 0.772 0.407 15.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.44 44.74 33360 1749 99.98 0.17593 0.17478 0.1747 0.19711 0.1972 RANDOM 27.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.232 r_dihedral_angle_3_deg 11.983 r_long_range_B_refined 8.414 r_long_range_B_other 8.363 r_dihedral_angle_1_deg 8.011 r_scangle_other 4.644 r_mcangle_other 3.957 r_mcangle_it 3.954 r_scbond_other 3.117 r_scbond_it 3.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.232 r_dihedral_angle_3_deg 11.983 r_long_range_B_refined 8.414 r_long_range_B_other 8.363 r_dihedral_angle_1_deg 8.011 r_scangle_other 4.644 r_mcangle_other 3.957 r_mcangle_it 3.954 r_scbond_other 3.117 r_scbond_it 3.115 r_mcbond_it 2.365 r_mcbond_other 2.331 r_angle_refined_deg 1.948 r_angle_other_deg 0.639 r_chiral_restr 0.095 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1474 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PDB_EXTRACT data extraction REFMAC phasing