9R3R | pdb_00009r3r

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5ELO

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.8	293	Protein: 30 mg/ml in 25 mM HEPES, 0.5 M NaCl, 5 % glycerol, 2 mM TCEP, pH 7, 5 mM lysine Reservoir: 25% PEG 3350, 0.2 M Li sulfate, 0.1 M tris pH 7.8

Crystal Properties
Matthews coefficient	Solvent content
2.44	49.69

Symmetry
Space Group	P 2 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2017-05-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE MASSIF-1	0.966	ESRF	MASSIF-1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	47.36	99.7	0.057	0.044	0.999	11.4	4.7		191914

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	1.53	100		0.851	0.655	0.542	1.5

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.5	46.618	191833	9709	99.579	0.159	0.1576	0.1673	0.1806	0.1887	21.927

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.714			0.928		-0.214

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.08
r_dihedral_angle_3_deg	11.586
r_dihedral_angle_2_deg	8.04
r_lrange_it	7.063
r_lrange_other	6.943
r_dihedral_angle_1_deg	6.437
r_scangle_other	6.068
r_scangle_it	6.066
r_scbond_other	3.981
r_scbond_it	3.98

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.08
r_dihedral_angle_3_deg	11.586
r_dihedral_angle_2_deg	8.04
r_lrange_it	7.063
r_lrange_other	6.943
r_dihedral_angle_1_deg	6.437
r_scangle_other	6.068
r_scangle_it	6.066
r_scbond_other	3.981
r_scbond_it	3.98
r_mcangle_it	2.819
r_mcangle_other	2.818
r_mcbond_it	2.025
r_mcbond_other	2.025
r_angle_refined_deg	1.97
r_angle_other_deg	0.651
r_nbd_refined	0.217
r_symmetry_xyhbond_nbd_refined	0.196
r_nbtor_refined	0.186
r_symmetry_nbd_other	0.185
r_nbd_other	0.184
r_xyhbond_nbd_refined	0.157
r_symmetry_nbd_refined	0.121
r_chiral_restr	0.101
r_symmetry_nbtor_other	0.083
r_ncsr_local_group_1	0.07
r_symmetry_xyhbond_nbd_other	0.039
r_bond_refined_d	0.012
r_gen_planes_refined	0.011
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8059
Nucleic Acid Atoms
Solvent Atoms	940
Heterogen Atoms	75

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.