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Crystal structure of human MAO B in complex with ((E)-3-(3-nitrophenyl)-1-(3-(trifluoromethyl)phenyl)prop-2-en-1-one (4b)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7B0V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 12% PEG4000, 100 mN ADA pH 6.5, 70 mM lithium sulphate, 8.5 mM Zwittergent 3-12
Crystal Properties Matthews coefficient Solvent content 2.73 54.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.222 α = 90 b = 222.163 β = 90 c = 86.039 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2024-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.97 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 47.268 100 0.057 0.067 0.036 0.999 18.2 6.6 177699
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.59 0.566 0.671 0.357 0.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.6 47.268 164885 4135 99.949 0.14 0.1395 0.1538 0.1623 0.1756 18.697
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.042 -0.846 -0.196
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.043 r_dihedral_angle_other_3_deg 20.804 r_dihedral_angle_4_deg 14.109 r_dihedral_angle_3_deg 13.031 r_dihedral_angle_1_deg 6.502 r_lrange_it 6.085 r_lrange_other 5.914 r_scangle_it 5.045 r_scangle_other 5.045 r_scbond_it 3.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.043 r_dihedral_angle_other_3_deg 20.804 r_dihedral_angle_4_deg 14.109 r_dihedral_angle_3_deg 13.031 r_dihedral_angle_1_deg 6.502 r_lrange_it 6.085 r_lrange_other 5.914 r_scangle_it 5.045 r_scangle_other 5.045 r_scbond_it 3.391 r_scbond_other 3.387 r_mcangle_other 2.318 r_mcangle_it 2.317 r_angle_other_deg 1.903 r_angle_refined_deg 1.884 r_mcbond_it 1.672 r_mcbond_other 1.667 r_nbd_other 0.335 r_nbd_refined 0.217 r_symmetry_nbd_other 0.194 r_nbtor_refined 0.179 r_symmetry_xyhbond_nbd_refined 0.155 r_xyhbond_nbd_refined 0.144 r_symmetry_nbd_refined 0.126 r_chiral_restr 0.105 r_symmetry_nbtor_other 0.087 r_symmetry_xyhbond_nbd_other 0.055 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7926 Nucleic Acid Atoms Solvent Atoms 908 Heterogen Atoms 178
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing