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Cryo-EM structure of the flotillin-associated rhodopsin PsFAR in detergent micelle
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.428 r_dihedral_angle_2_deg 15.308 r_long_range_B_refined 14.005 r_long_range_B_other 14.004 r_scangle_other 11.466 r_mcangle_it 8 r_mcangle_other 8 r_scbond_it 7.302 r_scbond_other 7.302 r_dihedral_angle_1_deg 5.933
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.428 r_dihedral_angle_2_deg 15.308 r_long_range_B_refined 14.005 r_long_range_B_other 14.004 r_scangle_other 11.466 r_mcangle_it 8 r_mcangle_other 8 r_scbond_it 7.302 r_scbond_other 7.302 r_dihedral_angle_1_deg 5.933 r_mcbond_it 5.382 r_mcbond_other 5.381 r_angle_refined_deg 2.094 r_angle_other_deg 0.674 r_chiral_restr 0.097 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample flotillin-associated rhodopsin PsFAR
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details Blotting 4-6 second, force 0
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 212403 Reported Resolution (Å) 2.56 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION