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Trypanosoma cruzi enoyl-CoA hydratase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MJ3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 292 10% PEG 8K, 0.2M MgCl2, 0.1M Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.61 52.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.527 α = 90 b = 132.527 β = 90 c = 83.156 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2022-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97628 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 39.09 100 0.074 0.083 0.036 1 13.1 10.6 36786 45.31
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 2.96 3.306 1.51 0.4 0.5 10.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2 39.09 36784 1810 99.9 0.23 0.2182 0.2187 0.2529 0.2553 82.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.7 1.35 2.7 -8.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.166 r_dihedral_angle_6_deg 14.103 r_lrange_it 6.696 r_lrange_other 6.687 r_dihedral_angle_2_deg 6.424 r_dihedral_angle_1_deg 6.388 r_scangle_it 4.276 r_scangle_other 4.249 r_mcangle_it 3.729 r_mcangle_other 3.728
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.166 r_dihedral_angle_6_deg 14.103 r_lrange_it 6.696 r_lrange_other 6.687 r_dihedral_angle_2_deg 6.424 r_dihedral_angle_1_deg 6.388 r_scangle_it 4.276 r_scangle_other 4.249 r_mcangle_it 3.729 r_mcangle_other 3.728 r_scbond_it 2.758 r_scbond_other 2.673 r_mcbond_it 2.476 r_mcbond_other 2.476 r_angle_refined_deg 1.625 r_angle_other_deg 0.55 r_xyhbond_nbd_refined 0.259 r_nbd_refined 0.243 r_nbd_other 0.24 r_symmetry_xyhbond_nbd_refined 0.215 r_symmetry_nbd_other 0.209 r_symmetry_nbd_refined 0.202 r_nbtor_refined 0.178 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.08 r_xyhbond_nbd_other 0.076 r_symmetry_xyhbond_nbd_other 0.033 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3786 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement autoPROC data processing DIALS data reduction Aimless data scaling MOLREP phasing