9QUX | pdb_00009qux

Solution structure of the Homer1 EVH1 domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
23D 1H-15N NOESY180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
33D 1H-15N TOCSY180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
43D HNCA180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
53D HNCACB180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
153D HN(CO)CA180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
143D HN(COCA)CB180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
133D HNCO180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
123D HCACO180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
112D 1H-13C HSQC180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
102D 1H-15N HSQC180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
93D HCAN180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
82D HBCBCGCDHD180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
73D H(CCO)NH180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
63D HCCH-TOCSY180 uM [U-13C; U-15N] Homer1 EVH1, 50 mM Sodium phosphate buffer, 20 mM sodium chloride, 0.02 % NaN395% H2O/5% D2O215 mM7.361 atm298Bruker AVANCE NEO 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO700
NMR Refinement
MethodDetailsSoftware
simulated annealingFrom the 20 CYANA-calculated conformers, each was subjected to a gentle simulated annealing protocol with an upper temperature of 150 C to calculate 20 conformers from which the one with the lowest energy was retained.X-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (medoid)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1peak pickingCcpNmr Analysis2.5.2CCPN
2structure calculationCYANA3.0Guntert, Mumenthaler and Wuthrich
3refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore