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Structure of BromoCatch: Brd2BD2 L383A,D434C in complex with MR116.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 292 Morpheus: PEG 500 MME 40% (v/v), PEG 20,000 20 % (w/v), 0.12 M ethylene glycols, 0.1 M Tris-BICINE pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.28 46.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.13 α = 90 b = 71.64 β = 90 c = 32.05 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M Beamsize: 20x20um 2024-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.6199 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 35.846 99.9 0.035 0.037 0.014 1 42.6 13.2 30315
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 0.096 0.104 0.039 0.997 20.7 13.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.3 35.846 30269 1503 99.917 0.148 0.147 0.1476 0.163 0.1628 12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.179 -0.268 0.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.222 r_dihedral_angle_6_deg 17.028 r_dihedral_angle_3_deg 12.588 r_dihedral_angle_other_2_deg 11.333 r_dihedral_angle_1_deg 5.628 r_dihedral_angle_other_3_deg 5.522 r_lrange_it 4.738 r_lrange_other 4.584 r_scangle_it 3.262 r_scangle_other 3.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.222 r_dihedral_angle_6_deg 17.028 r_dihedral_angle_3_deg 12.588 r_dihedral_angle_other_2_deg 11.333 r_dihedral_angle_1_deg 5.628 r_dihedral_angle_other_3_deg 5.522 r_lrange_it 4.738 r_lrange_other 4.584 r_scangle_it 3.262 r_scangle_other 3.26 r_angle_refined_deg 2.265 r_scbond_it 2.128 r_scbond_other 2.126 r_mcangle_other 1.748 r_mcangle_it 1.739 r_mcbond_it 1.19 r_mcbond_other 1.189 r_angle_other_deg 0.691 r_nbd_refined 0.236 r_nbtor_refined 0.199 r_symmetry_nbd_other 0.17 r_symmetry_nbd_refined 0.161 r_nbd_other 0.155 r_symmetry_xyhbond_nbd_refined 0.13 r_chiral_restr 0.105 r_xyhbond_nbd_refined 0.105 r_symmetry_nbtor_other 0.071 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_gen_planes_other 0.001 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 907 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement Aimless data scaling BUCCANEER model building xia2 data reduction