☰ Navigation Tabs
Crystal structure of mutant NtA622L in complex with NADP+ and Nicotinamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other A previously solved lower resolution structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 3.75 mg/ml purified A119, 0.1 M Sodium formate, 10% w/v Polyethylene glycol 3,350
(Index HT Screen condition 90)
Crystal Properties Matthews coefficient Solvent content 2.11 41.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.289 α = 90 b = 47.459 β = 90 c = 142.623 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2022-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.03323 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 47.46 87.8 0.028 0.033 0.017 0.999 26.6 6.4 64136
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 0.762 0.94 0.542 0.604 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.3 45.031 64093 3070 87.443 0.135 0.1335 0.1335 0.1682 0.168 25.242
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.186 -0.12 -0.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 25.816 r_lrange_it 20.191 r_lrange_other 18.548 r_dihedral_angle_6_deg 15.939 r_dihedral_angle_3_deg 13.006 r_scangle_it 11.983 r_scangle_other 11.98 r_mcangle_other 9.075 r_mcangle_it 9.06 r_scbond_it 8.631
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 25.816 r_lrange_it 20.191 r_lrange_other 18.548 r_dihedral_angle_6_deg 15.939 r_dihedral_angle_3_deg 13.006 r_scangle_it 11.983 r_scangle_other 11.98 r_mcangle_other 9.075 r_mcangle_it 9.06 r_scbond_it 8.631 r_scbond_other 8.628 r_dihedral_angle_2_deg 8.382 r_mcbond_it 6.634 r_mcbond_other 6.548 r_dihedral_angle_1_deg 6.291 r_rigid_bond_restr 3.966 r_angle_refined_deg 1.91 r_angle_other_deg 0.806 r_xyhbond_nbd_refined 0.234 r_nbd_refined 0.223 r_nbd_other 0.193 r_nbtor_refined 0.18 r_symmetry_nbd_other 0.178 r_symmetry_xyhbond_nbd_refined 0.151 r_symmetry_nbd_refined 0.142 r_chiral_restr 0.109 r_symmetry_nbtor_other 0.074 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2417 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling XDS data reduction Coot model building PHASER phasing