Experiment: 9QQY

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6YRJ

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	7.5	291	6.2 mg/mL of protein in 20mM Sodium phosphate, 150mM NaCl pH 7 was mixed with 125 mM MgCl2, 125 mM HEPES, 20% PEG 4000 pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
2.64	53.36

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	CCD	RAYONIX MX300-HS		2022-11-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	FREE ELECTRON LASER	SACLA BEAMLINE BL2	1.1264	SACLA	BL2

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		fixed target

Fixed Target
Diffraction ID	Description	Sample Holding	Support Base	Motion control	Details	Sample Solvent
1		silicon chip

Measurement
Diffraction ID	Pulse Duration	Pulse Repetition Rate	Focal Spot Size	Pulse Energy	Photons Per Pulse
1	10 (fs)	30		11 (KeV)

Data Reduction
Diffraction ID	Frames Indexed	Crystal Hits	Frames Indexed	Latices Merged
1		11890

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	46.05	100	0.914	0.217	5.9	94.8		168749

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.949			0.25	1.612

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.9	41.05	160314	8458	99.97	0.21737	0.21506	0.2189	0.26108	0.2624	RANDOM	29.837

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.04			0.22		-0.27

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	13.278
r_dihedral_angle_2_deg	11.913
r_long_range_B_refined	7.563
r_long_range_B_other	7.56
r_dihedral_angle_1_deg	7.094
r_scangle_other	6.126
r_mcangle_it	4.643
r_mcangle_other	4.643
r_scbond_it	4.089
r_scbond_other	4.088

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	13.278
r_dihedral_angle_2_deg	11.913
r_long_range_B_refined	7.563
r_long_range_B_other	7.56
r_dihedral_angle_1_deg	7.094
r_scangle_other	6.126
r_mcangle_it	4.643
r_mcangle_other	4.643
r_scbond_it	4.089
r_scbond_other	4.088
r_mcbond_it	3.35
r_mcbond_other	3.349
r_angle_refined_deg	2.048
r_angle_other_deg	0.695
r_chiral_restr	0.1
r_bond_refined_d	0.012
r_gen_planes_refined	0.011
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded