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BAD pS118 phosphopeptide binding to 14-3-3sigma
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.61 52.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.606 α = 90 b = 112.105 β = 90 c = 62.952 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2024-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873128 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 45.76 89.1 1 19.4 13 63729
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 0.589 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 45.76 60467 3239 89.08 0.16453 0.16284 0.1623 0.19484 0.197 RANDOM 25.216
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.64 -2.03 -2.62
RMS Deviations Key Refinement Restraint Deviation r_scangle_other 44.597 r_long_range_B_other 40.552 r_long_range_B_refined 40.446 r_scbond_it 36.943 r_scbond_other 36.934 r_mcangle_other 17.07 r_mcangle_it 17.062 r_mcbond_it 14.258 r_mcbond_other 14.253 r_dihedral_angle_3_deg 13.892
RMS Deviations Key Refinement Restraint Deviation r_scangle_other 44.597 r_long_range_B_other 40.552 r_long_range_B_refined 40.446 r_scbond_it 36.943 r_scbond_other 36.934 r_mcangle_other 17.07 r_mcangle_it 17.062 r_mcbond_it 14.258 r_mcbond_other 14.253 r_dihedral_angle_3_deg 13.892 r_rigid_bond_restr 12.319 r_dihedral_angle_1_deg 4.778 r_angle_refined_deg 0.932 r_angle_other_deg 0.411 r_chiral_restr 0.045 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1942 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 6
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing