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BV333 aminotransferase from Streptomyces sp. mutant F61C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9GH9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 292.15 Morpheus Fusion Screen A7
Crystal Properties Matthews coefficient Solvent content 2.45 49.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.747 α = 90 b = 176.464 β = 90 c = 111.259 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113.15 PIXEL DECTRIS EIGER X 16M 2024-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.852 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.31 88.23 94.75 0.069 1 8.9 6 221445 19.77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.31 1.33 64.8 2.047 0.3 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.31 88.23 221381 2041 94.749 0.188 0.1879 0.1815 0.2102 0.2036 27.831
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.304 -0.529 0.832
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.699 r_dihedral_angle_3_deg 13.091 r_dihedral_angle_2_deg 11.447 r_lrange_it 8.059 r_scangle_it 7.671 r_dihedral_angle_1_deg 6.45 r_scbond_it 5.382 r_mcangle_it 3.607 r_mcbond_it 2.759 r_angle_refined_deg 2.411
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.699 r_dihedral_angle_3_deg 13.091 r_dihedral_angle_2_deg 11.447 r_lrange_it 8.059 r_scangle_it 7.671 r_dihedral_angle_1_deg 6.45 r_scbond_it 5.382 r_mcangle_it 3.607 r_mcbond_it 2.759 r_angle_refined_deg 2.411 r_nbtor_refined 0.299 r_chiral_restr 0.206 r_nbd_refined 0.193 r_xyhbond_nbd_refined 0.152 r_symmetry_nbd_refined 0.137 r_symmetry_xyhbond_nbd_refined 0.108 r_ncsr_local_group_1 0.042 r_bond_refined_d 0.019 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7044 Nucleic Acid Atoms Solvent Atoms 601 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction XSCALE data scaling MoRDa phasing