☰ Navigation Tabs
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 29d
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 13% PEG3350, 0.1 HEPES-NaOH pH 7.5, 0.2 M ammonium acetate 10% Glycol
Crystal Properties Matthews coefficient Solvent content 2.38 48.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.628 α = 90 b = 48.628 β = 90 c = 194.979 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 48.74 100 0.186 0.204 0.084 0.998 9.2 10.6 17740
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.11 100 1.764 1.934 0.79 0.661 1.4 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 41.198 17680 859 99.943 0.217 0.2151 0.2157 0.261 0.2632 39.412
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.946 -0.473 -0.946 3.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.117 r_dihedral_angle_6_deg 14.899 r_dihedral_angle_3_deg 13.621 r_dihedral_angle_1_deg 9.392 r_lrange_it 6.033 r_lrange_other 6.026 r_scangle_it 4.003 r_scangle_other 4.002 r_mcangle_other 3.383 r_mcangle_it 3.382
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.117 r_dihedral_angle_6_deg 14.899 r_dihedral_angle_3_deg 13.621 r_dihedral_angle_1_deg 9.392 r_lrange_it 6.033 r_lrange_other 6.026 r_scangle_it 4.003 r_scangle_other 4.002 r_mcangle_other 3.383 r_mcangle_it 3.382 r_scbond_it 2.752 r_scbond_other 2.751 r_mcbond_it 2.224 r_mcbond_other 2.223 r_angle_refined_deg 2.126 r_angle_other_deg 0.722 r_symmetry_nbd_refined 0.222 r_nbd_refined 0.218 r_symmetry_nbd_other 0.203 r_symmetry_xyhbond_nbd_refined 0.19 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.171 r_nbd_other 0.143 r_chiral_restr 0.1 r_symmetry_nbtor_other 0.097 r_ncsr_local_group_1 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1856 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing