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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 29b
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 12% PEG3350, 0.1 HEPES-NaOH pH 7.5, 0.2 M ammonium acetate 10% Glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.865 α = 90 b = 48.865 β = 90 c = 196.913 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 49.23 100 0.116 0.128 0.054 0.999 12 10.3 19440
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.05 100 1.61 1.781 0.758 0.592 1.5 10.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 42.354 19381 952 99.969 0.214 0.2115 0.2548 0.2406 40.515
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.745 -0.372 -0.745 2.416
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.061 r_dihedral_angle_6_deg 14.634 r_dihedral_angle_3_deg 13.359 r_dihedral_angle_1_deg 9.013 r_lrange_other 6.376 r_lrange_it 6.373 r_scangle_it 4.51 r_scangle_other 4.509 r_mcangle_it 3.954 r_mcangle_other 3.954
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.061 r_dihedral_angle_6_deg 14.634 r_dihedral_angle_3_deg 13.359 r_dihedral_angle_1_deg 9.013 r_lrange_other 6.376 r_lrange_it 6.373 r_scangle_it 4.51 r_scangle_other 4.509 r_mcangle_it 3.954 r_mcangle_other 3.954 r_scbond_it 3.175 r_scbond_other 3.174 r_mcbond_it 2.835 r_mcbond_other 2.832 r_angle_refined_deg 2.046 r_angle_other_deg 0.65 r_nbd_refined 0.21 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.179 r_nbd_other 0.151 r_symmetry_nbd_refined 0.126 r_symmetry_xyhbond_nbd_refined 0.124 r_xyhbond_nbd_refined 0.122 r_ncsr_local_group_1 0.109 r_symmetry_nbtor_other 0.093 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1864 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing