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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 15a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.1 HEPES-NaOH pH 7.5, 0.2 M ammonium thiocyanate 10% Glycol
Crystal Properties Matthews coefficient Solvent content 2.39 48.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.845 α = 90 b = 48.845 β = 90 c = 194.586 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 48.65 99.9 0.143 0.158 0.067 0.996 10.1 10.2 13352
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.26 2.34 99.4 1.608 1.771 0.735 0.621 1.8 10.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.264 41.37 13301 589 99.805 0.271 0.2683 0.2663 0.3193 0.3148 53.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.982 -0.491 -0.982 3.187
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.546 r_dihedral_angle_6_deg 14.815 r_dihedral_angle_1_deg 8.854 r_lrange_it 6.283 r_lrange_other 6.282 r_mcangle_it 4.681 r_mcangle_other 4.679 r_scangle_it 4.516 r_scangle_other 4.514 r_dihedral_angle_2_deg 4.161
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.546 r_dihedral_angle_6_deg 14.815 r_dihedral_angle_1_deg 8.854 r_lrange_it 6.283 r_lrange_other 6.282 r_mcangle_it 4.681 r_mcangle_other 4.679 r_scangle_it 4.516 r_scangle_other 4.514 r_dihedral_angle_2_deg 4.161 r_mcbond_it 3.205 r_mcbond_other 3.204 r_scbond_it 3.031 r_scbond_other 3.029 r_angle_refined_deg 2.229 r_chiral_restr_other 1.5 r_angle_other_deg 1.202 r_nbd_refined 0.211 r_symmetry_nbd_other 0.206 r_nbtor_refined 0.183 r_nbd_other 0.17 r_xyhbond_nbd_refined 0.138 r_ncsr_local_group_1 0.1 r_chiral_restr 0.099 r_symmetry_nbtor_other 0.098 r_symmetry_nbd_refined 0.074 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1724 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing