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CryoEM structure of the human LRP2 receptor ectodomain in complex with LRPAP1
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.3301 f_angle_d 0.7677 f_chiral_restr 0.093 f_bond_d 0.0051 f_plane_restr 0.0043
Sample Human LRP2 ectodomain in complex with unidentified endogenous ligands and LRPAP1 Sample Components LRPAP1 Human LRP2 ectodomain in complex with unidentified endogenous ligands
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 318131 Reported Resolution (Å) 3.34 Resolution Method FSC 0.143 CUT-OFF Other Details Composite map (please refer to related focused map and initial consensus map) Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type TFS FALCON 4i (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 750 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT PHENIX 1.21.2_5419
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION