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Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with VW dipeptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A2R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 1.2 M sodium citrate, 0.1 M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 4.27 71.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.529 α = 90 b = 172.529 β = 90 c = 103.745 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2023-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.95 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 43.17 100 0.07 0.997 8.6 21.7 58412
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 0.848 0.824 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.2 43.17 58400 2649 99.914 0.172 0.1699 0.2115 0.2154 41.03
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.196 -1.098 -2.196 7.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.77 r_dihedral_angle_3_deg 14.666 r_dihedral_angle_2_deg 8.956 r_lrange_other 8.68 r_lrange_it 8.676 r_scangle_it 7.867 r_scangle_other 7.866 r_dihedral_angle_1_deg 6.116 r_scbond_it 5.175 r_scbond_other 5.174
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.77 r_dihedral_angle_3_deg 14.666 r_dihedral_angle_2_deg 8.956 r_lrange_other 8.68 r_lrange_it 8.676 r_scangle_it 7.867 r_scangle_other 7.866 r_dihedral_angle_1_deg 6.116 r_scbond_it 5.175 r_scbond_other 5.174 r_mcangle_it 4.31 r_mcangle_other 4.31 r_mcbond_it 3.043 r_mcbond_other 3.042 r_angle_refined_deg 1.729 r_angle_other_deg 0.606 r_nbd_other 0.249 r_nbd_refined 0.222 r_nbtor_refined 0.192 r_symmetry_nbd_other 0.186 r_chiral_restr 0.176 r_symmetry_xyhbond_nbd_refined 0.163 r_xyhbond_nbd_refined 0.152 r_symmetry_nbtor_other 0.08 r_symmetry_nbd_refined 0.061 r_symmetry_xyhbond_nbd_other 0.026 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4909 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing