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Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with IW dipeptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A2R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 299 1.2 M sodium citrate, 0.1 M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 4.26 71.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.236 α = 90 b = 173.236 β = 90 c = 103.069 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2024-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.95 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50.059 100 0.062 0.997 8.3 10.6 58565
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 0.572 0.704 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.2 50.059 58558 3107 99.993 0.173 0.1705 0.1771 0.2082 0.2162 41.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.561 -0.781 -1.561 5.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.377 r_dihedral_angle_6_deg 14.905 r_lrange_it 10.237 r_lrange_other 10.237 r_scangle_it 9.73 r_scangle_other 9.729 r_dihedral_angle_2_deg 8.07 r_scbond_it 7.076 r_scbond_other 7.074 r_dihedral_angle_1_deg 6.457
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.377 r_dihedral_angle_6_deg 14.905 r_lrange_it 10.237 r_lrange_other 10.237 r_scangle_it 9.73 r_scangle_other 9.729 r_dihedral_angle_2_deg 8.07 r_scbond_it 7.076 r_scbond_other 7.074 r_dihedral_angle_1_deg 6.457 r_mcangle_it 5.557 r_mcangle_other 5.556 r_mcbond_it 4.314 r_mcbond_other 4.314 r_angle_refined_deg 2.463 r_angle_other_deg 0.816 r_nbd_refined 0.233 r_nbd_other 0.228 r_symmetry_nbd_other 0.215 r_symmetry_xyhbond_nbd_refined 0.206 r_nbtor_refined 0.201 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.115 r_symmetry_nbtor_other 0.095 r_symmetry_nbd_refined 0.094 r_gen_planes_other 0.024 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4924 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing