9Q0J | pdb_00009q0j

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		294	10% MPD, 40 mM Sodium cacodylate trihydrate pH 6.0 12 mM Spermine, 80 mM KCl

Crystal Properties
Matthews coefficient	Solvent content
2.22	43.55

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2024-07-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL12-1	0.92002	SSRL	BL12-1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	33	98.5	0.075	0.09	0.049	0.994	5.3	3.3		9056

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.05	98.8		0.622	0.741	0.398	0.691		3.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	SAD	FREE R-VALUE	2	32.143	9055	492	98.381	0.226	0.2248	0.2335	0.2499	0.2449	53.496

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.303		-0.06	0.108		-0.805

RMS Deviations
Key	Refinement Restraint Deviation
r_lrange_it	5.756
r_lrange_other	5.755
r_scangle_it	4.982
r_scangle_other	4.981
r_scbond_it	3.461
r_scbond_other	3.459
r_angle_refined_deg	1.691
r_angle_other_deg	0.49
r_dihedral_angle_other_2_deg	0.404
r_nbtor_refined	0.261

RMS Deviations
Key	Refinement Restraint Deviation
r_lrange_it	5.756
r_lrange_other	5.755
r_scangle_it	4.982
r_scangle_other	4.981
r_scbond_it	3.461
r_scbond_other	3.459
r_angle_refined_deg	1.691
r_angle_other_deg	0.49
r_dihedral_angle_other_2_deg	0.404
r_nbtor_refined	0.261
r_symmetry_nbd_refined	0.215
r_symmetry_nbd_other	0.198
r_nbd_other	0.197
r_nbd_refined	0.147
r_symmetry_xyhbond_nbd_refined	0.143
r_xyhbond_nbd_refined	0.117
r_symmetry_nbtor_other	0.098
r_chiral_restr	0.072
r_gen_planes_refined	0.029
r_ncsr_local_group_1	0.014
r_ncsr_local_group_2	0.014
r_ncsr_local_group_3	0.014
r_bond_refined_d	0.012
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms
Nucleic Acid Atoms	1017
Solvent Atoms	4
Heterogen Atoms

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.