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Co-crystal structure of BAF60A (SMARCD1) bound to PPSC-001
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other BAF60A apo
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291.15 0.2M Ammonium formate pH 6.6, 20% w/v PEG3350
Crystal Properties Matthews coefficient Solvent content 3.11 60.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.18 α = 90 b = 70.2 β = 118.92 c = 76.3 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2024-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95373 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.31 49.4 99.8 0.997 17.2 6.8 16082
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.31 2.39 0.948
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.31 49.37 15298 784 99.79 0.21948 0.21753 0.2201 0.25757 0.259 RANDOM 55.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.17 -3.44 1.24 -1.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.89 r_dihedral_angle_4_deg 18.622 r_dihedral_angle_3_deg 15.831 r_long_range_B_refined 7.63 r_long_range_B_other 7.624 r_dihedral_angle_1_deg 6.738 r_scangle_other 5.251 r_mcangle_it 4.494 r_mcangle_other 4.492 r_scbond_it 3.149
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.89 r_dihedral_angle_4_deg 18.622 r_dihedral_angle_3_deg 15.831 r_long_range_B_refined 7.63 r_long_range_B_other 7.624 r_dihedral_angle_1_deg 6.738 r_scangle_other 5.251 r_mcangle_it 4.494 r_mcangle_other 4.492 r_scbond_it 3.149 r_scbond_other 3.148 r_mcbond_it 2.727 r_mcbond_other 2.722 r_angle_refined_deg 1.266 r_angle_other_deg 1.103 r_chiral_restr 0.047 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1972 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement PHASER phasing PDB_EXTRACT data extraction DIALS data reduction pointless data scaling