9PLL | pdb_00009pll

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		289	100 mM NaCl, 100 mM HEPES, pH 7.5, 12 % polyethylene glycol 20,000

Crystal Properties
Matthews coefficient	Solvent content
2.48	50.4

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	99.5	PIXEL	DECTRIS EIGER2 XE 16M		2025-05-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL12-1	0.979460	SSRL	BL12-1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.56	49.51	99.4	0.128	7.4	6.1		57407

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.56	1.6			0.344

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.6	49.51	52315	2608	97.617	0.177	0.1748	0.1848	0.2137	0.2193	22.846

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.205			-0.844		-1.36

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	21.058
r_dihedral_angle_6_deg	15.94
r_dihedral_angle_3_deg	11.872
r_lrange_other	7.348
r_lrange_it	7.347
r_dihedral_angle_1_deg	6.975
r_scangle_it	4.894
r_scangle_other	4.893
r_scbond_it	3.139
r_scbond_other	3.138

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	21.058
r_dihedral_angle_6_deg	15.94
r_dihedral_angle_3_deg	11.872
r_lrange_other	7.348
r_lrange_it	7.347
r_dihedral_angle_1_deg	6.975
r_scangle_it	4.894
r_scangle_other	4.893
r_scbond_it	3.139
r_scbond_other	3.138
r_mcangle_other	2.51
r_mcangle_it	2.504
r_mcbond_it	1.693
r_angle_refined_deg	1.692
r_mcbond_other	1.692
r_angle_other_deg	0.594
r_symmetry_xyhbond_nbd_refined	0.353
r_symmetry_nbd_refined	0.255
r_xyhbond_nbd_refined	0.249
r_nbd_other	0.228
r_nbd_refined	0.212
r_symmetry_nbd_other	0.199
r_nbtor_refined	0.183
r_chiral_restr	0.09
r_symmetry_nbtor_other	0.087
r_chiral_restr_other	0.033
r_symmetry_xyhbond_nbd_other	0.017
r_bond_refined_d	0.009
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2671
Nucleic Acid Atoms
Solvent Atoms	320
Heterogen Atoms	35

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.