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Human OCTN2 bound to carnitine in the occluded conformation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold O76082
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 5.1003 f_angle_d 0.5394 f_chiral_restr 0.0391 f_plane_restr 0.0057 f_bond_d 0.003
Sample Novel organic cation transport 2 (OCTN2;SLC22A5) bound to carnitine in the occluded conformation.
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 181269 Reported Resolution (Å) 2.72 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 82
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.6 IMAGE ACQUISITION EPU 2.14 MODEL FITTING ISOLDE 1.8 MODEL FITTING Coot 0.9.8.94 INITIAL EULER ASSIGNMENT cryoSPARC 4.6 FINAL EULER ASSIGNMENT cryoSPARC 4.6 CLASSIFICATION cryoSPARC 4.6 RECONSTRUCTION cryoSPARC 4.6 MODEL REFINEMENT PHENIX 1.21.1_5286
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY 6410000