Experiment: 9P6D

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	292	Protein: 7.0 mg/ml, 0.5M Sodium chloride, 0.01M Tris pH 8.3; Screen: PEGs II (B6), 0.1M HEPES (pH 7.5), 20% (w/v) PEG1500 Cryo: Reservoir

Crystal Properties
Matthews coefficient	Solvent content
1.9	35.1

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2021-03-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 21-ID-G	0.97856	APS	21-ID-G

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	30	99.8	0.127	0.127	0.14	0.057	0.996	14.8	5.9		36987		-3	27.2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.03	100		0.478	0.703	1.94	6.1

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2	27.79	34923	1894	99.72	0.20341	0.20094	0.2096	0.24956	0.2548	RANDOM	37.929

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-3.58			0.43		3.14

RMS Deviations
Key	Refinement Restraint Deviation
r_long_range_B_other	10.061
r_long_range_B_refined	10.059
r_scangle_other	6.82
r_dihedral_angle_3_deg	6.139
r_scbond_it	4.173
r_scbond_other	4.172
r_mcangle_other	4.167
r_mcangle_it	4.164
r_dihedral_angle_1_deg	3.118
r_mcbond_it	2.6

RMS Deviations
Key	Refinement Restraint Deviation
r_long_range_B_other	10.061
r_long_range_B_refined	10.059
r_scangle_other	6.82
r_dihedral_angle_3_deg	6.139
r_scbond_it	4.173
r_scbond_other	4.172
r_mcangle_other	4.167
r_mcangle_it	4.164
r_dihedral_angle_1_deg	3.118
r_mcbond_it	2.6
r_mcbond_other	2.598
r_angle_refined_deg	1.39
r_dihedral_angle_2_deg	1.16
r_angle_other_deg	0.445
r_chiral_restr	0.066
r_gen_planes_refined	0.01
r_gen_planes_other	0.008
r_bond_refined_d	0.003
r_bond_other_d	0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4426
Nucleic Acid Atoms
Solvent Atoms	259
Heterogen Atoms	4

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9P6D | pdb_00009p6d