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Structure of Methanogen MtxX (Methanogen Marker Protein MMP4) from Methanothermobacter thermautotrophicus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 297 0.1 M Na HEPES pH 7.5, 10% w/v PEG 8000, 8% ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.21 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.484 α = 90 b = 72.31 β = 96.115 c = 65.58 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M Si mirrors with Rh stripes 2017-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.953653 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 65.29 100 0.071 0.027 1 15.4 6.3 69258 24.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 99.6 1 0.48 0.78 1 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS FREE R-VALUE 1.6 65.29 69236 3507 99.951 0.164 0.1628 0.185 0.178 Random selection 36.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.313 0.84 -0.612 0.728
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.132 r_dihedral_angle_3_deg 13.81 r_lrange_it 8.47 r_lrange_other 8.435 r_dihedral_angle_2_deg 7.829 r_scangle_it 6.49 r_scangle_other 6.489 r_dihedral_angle_1_deg 6.288 r_scbond_it 4.202 r_scbond_other 4.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.132 r_dihedral_angle_3_deg 13.81 r_lrange_it 8.47 r_lrange_other 8.435 r_dihedral_angle_2_deg 7.829 r_scangle_it 6.49 r_scangle_other 6.489 r_dihedral_angle_1_deg 6.288 r_scbond_it 4.202 r_scbond_other 4.201 r_mcangle_it 3.875 r_mcangle_other 3.875 r_mcbond_it 2.665 r_mcbond_other 2.664 r_angle_refined_deg 1.721 r_angle_other_deg 0.605 r_nbd_refined 0.223 r_symmetry_nbd_other 0.182 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.164 r_nbd_other 0.142 r_symmetry_nbd_refined 0.133 r_symmetry_xyhbond_nbd_refined 0.128 r_chiral_restr 0.09 r_symmetry_nbtor_other 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3565 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling CRANK2 phasing