9NUB | pdb_00009nub

NMR solution structure of unmodified human matrix Gla protein

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	520 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
2	3D HNCO	570 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
3	3D HN(CA)CO	570 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
4	3D CBCANH	570 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
5	3D (H)CC(CO)NH	570 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
6	3D HCCH-TOCSY	520 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
7	3D (H)N(CA)NNH	570 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
8	3D (H)N(COCA)NNH	570 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
10	3D 1H-15N TOCSY	520 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
11	3D 1H-15N NOESY	520 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
12	3D 1H-13C NOESY aliphatic	520 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
13	3D 1H-13C NOESY aromatic	520 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
14	T1/R1 relaxation	520 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
15	T2/R2 relaxation	520 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600
16	1H-15N heteronoe	520 uM [U-13C; U-15N] Matrix Gla protein, 50 mM Boric acid, 10 % D2O	90% H2O/10% D2O	no salt added	5.7	1 atm	280	Bruker AVANCE III 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600

NMR Refinement
Method	Details	Software
simulated annealing		PONDEROSA-C/S

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (medoid)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	3.2	Bruker Biospin
2	chemical shift assignment	CcpNmr Analysis	2.5.2	CCPN
3	chemical shift assignment	CcpNmr Analysis Assign	3.2.5	CCPN
4	data analysis	CcpNmr Analysis	2.5.2	CCPN
5	data analysis	CcpNmr Analysis Assign	3.2.5	CCPN
6	peak picking	CcpNmr Analysis	2.5.2	CCPN
7	peak picking	CcpNmr Analysis Assign	3.2.5	CCPN
8	processing	NMRPipe	11.5	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
9	processing	NMRDraw	11.5	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
10	refinement	PONDEROSA-C/S	Build: 2020/01/21	Lee, Stark and Markley
11	refinement	Poky	Build: 11/27/2023r	Manthey, Tonelli, Clos II, Rahimi, Markley and Lee
12	structure calculation	PONDEROSA-C/S	Build: 2020/01/21	Lee, Stark and Markley
13	structure calculation	Poky	Build: 11/27/2023r	Manthey, Tonelli, Clos II, Rahimi, Markley and Lee
14	data analysis	PdbStat	5.24.031	Tejero, Snyder, Mao, Aramini, Montelione