9NS0 | pdb_00009ns0

Ground state of Src kinase domain

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-13C HSQC	250 uM [U-15N; U-2H] ILVMAT CH3 FY CEHE Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 800
2	2D 1H-13C HSQC aromatic	250 uM [U-15N; U-2H] ILVMAT CH3 FY CEHE Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 800
3	2D 1H-15N HSQC	250 uM [U-15N; U-2H] ILVMAT CH3 FY CEHE Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 800
4	3D 1H-15N NOESY	250 uM [U-15N; U-2H] ILVMAT CH3 FY CEHE Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 800
5	3D 1H-13C NOESY	250 uM [U-15N; U-2H] ILVMAT CH3 FY CEHE Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 800
6	3D 1H-13C NOESY aromatic	250 uM [U-15N; U-2H] ILVMAT CH3 FY CEHE Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 800
7	3D CCH_Noesy	250 uM [U-15N; U-2H] ILVMAT CH3 FY CEHE Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 800
8	3D HNCA	250 uM [U-13C; U-15N; U-2H] Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 700
9	3D HNCACB	250 uM [U-13C; U-15N; U-2H] Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 700
10	3D HNCO	250 uM [U-13C; U-15N; U-2H] Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 700
11	2D 1H-15N HSQC	250 uM [U-13C; U-15N; U-2H] Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 700
12	3D 1H-15N NOESY	250 uM [U-13C; U-15N; U-2H] Proto-oncogene tyrosine-protein kinase Src, 25 mM potassium chloride, 500 mM sodium chloride, 3 mM BME, 1 mM EDTA	90% H2O/10% D2O	500 mM	6.5	1 atm	298	Bruker AVANCE NEO 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	800
2	Bruker	AVANCE NEO	700

NMR Refinement
Method	Details	Software
molecular dynamics		CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	I-PINE		Lee, Bahrami, Dashti, Eghbalnia, Tonelli, Westler and Markley
4	peak picking	Poky		Manthey, Tonelli, Clos II, Rahimi, Markley and Lee
5	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6	collection	TopSpin		Bruker Biospin
7	geometry optimization	PSVS		Bhattacharya and Montelione