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Terminal two domains of ClfA002 with bound Fab of AZD7745
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1N67
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 295 9 mM MgCl2, 90 mM HEPES, 18% PEG 6000 (w/v), 1% Glycerol (v/v)
Crystal Properties Matthews coefficient Solvent content 2.7 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.582 α = 90 b = 66.164 β = 90.583 c = 107.875 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.0 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 35 99.9 0.06 0.999 16.3 6.6 117495
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.58 0.886
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.58 25.001 116697 5792 99.839 0.2 0.1986 0.2093 0.219 0.2254 20.624
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.098 -1.329 0.84 -0.715
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 12.931 r_dihedral_angle_3_deg 10.139 r_dihedral_angle_1_deg 6.759 r_dihedral_angle_2_deg 4.51 r_lrange_it 3.571 r_lrange_other 3.475 r_scangle_it 2.249 r_scangle_other 2.249 r_mcangle_it 1.724 r_mcangle_other 1.724
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 12.931 r_dihedral_angle_3_deg 10.139 r_dihedral_angle_1_deg 6.759 r_dihedral_angle_2_deg 4.51 r_lrange_it 3.571 r_lrange_other 3.475 r_scangle_it 2.249 r_scangle_other 2.249 r_mcangle_it 1.724 r_mcangle_other 1.724 r_scbond_other 1.373 r_scbond_it 1.372 r_angle_refined_deg 1.056 r_mcbond_it 1.023 r_mcbond_other 1.023 r_angle_other_deg 0.385 r_xyhbond_nbd_refined 0.195 r_symmetry_nbd_other 0.19 r_nbd_refined 0.188 r_nbtor_refined 0.169 r_nbd_other 0.147 r_symmetry_xyhbond_nbd_refined 0.121 r_symmetry_nbtor_other 0.082 r_symmetry_nbd_refined 0.071 r_chiral_restr 0.053 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5641 Nucleic Acid Atoms Solvent Atoms 364 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing