9NGX | pdb_00009ngx

Structure of the 5'SL-bound La Domain of the Human La-related Protein 6

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.7 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.7 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
2	3D HNCA	1.7 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.7 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
3	3D HNCACB	1.7 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.7 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
4	3D HNCO	1.7 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.7 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
5	3D HN(CA)CO	1.7 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.7 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
8	3D H(CC)(CO)NH	1.7 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.7 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
7	3D (H)CC(CO)NH	1.7 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.7 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
6	3D HCCH-COSY	1.7 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.7 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
9	2D 1H-13C HSQC	370 uM [U-98% 13C; U-98% 15N] LARP6(79-183), 370 uM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
11	3D HCCH-TOCSY	370 uM [U-98% 13C; U-98% 15N] LARP6(79-183), 370 uM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
10	3D HCCH-TOCSY	370 uM [U-98% 13C; U-98% 15N] LARP6(79-183), 370 uM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
12	2D 1H-15N HSQC	300 uM [U-98% 15N] LARP6(79-183), 300 uM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
13	3D 1H-15N NOESY	1.1 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.1 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
14	3D 1H-13C NOESY	1.1 mM [U-98% 13C; U-98% 15N] LARP6(79-183), 1.1 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
15	2D 1H-13C HSQC aliphatic	1.6 mM [U-98% 15N; 1,3-13C-glycerol] LARP6(79-183), 1.6 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
18	2D 1H-13C HSQC aromatic	1.6 mM [U-98% 15N; 1,3-13C-glycerol] LARP6(79-183), 1.6 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
17	3D 1H-13C NOESY aliphatic	1.6 mM [U-98% 15N; 1,3-13C-glycerol] LARP6(79-183), 1.6 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
16	3D 1H-13C NOESY aromatic	1.6 mM [U-98% 15N; 1,3-13C-glycerol] LARP6(79-183), 1.6 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
19	2D 1H-13C HSQC aliphatic	1.3 mM [U-98% 15N; 2-13C-glycerol] LARP6(79-183), 1.3 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
20	2D 1H-13C HSQC aromatic	1.3 mM [U-98% 15N; 2-13C-glycerol] LARP6(79-183), 1.3 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
21	3D 1H-13C NOESY aliphatic	1.3 mM [U-98% 15N; 2-13C-glycerol] LARP6(79-183), 1.3 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
22	3D 1H-13C NOESY aromatic	1.3 mM [U-98% 15N; 2-13C-glycerol] LARP6(79-183), 1.3 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	100% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
23	2D 1H-15N HSQC	1.9 mM [13C, 15N]-Arg LARP6(79-183), 1.9 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
24	2D 1H-13C HSQC	1.9 mM [13C, 15N]-Arg LARP6(79-183), 1.9 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700
26	2D 1H-13C CTHSQC	1 mM [13C]-Pro LARP6(79-183), 1 mM A2M5, 10 mM MES, 50 mM potassium chloride, 0.01 mg/mL DSS	90% H2O/10% D2O	50 mM	6.5	1 atm	298	Bruker AVANCE III 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	700

NMR Refinement
Method	Details	Software
torsion angle dynamics	simulated annealing	CYANA
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	400
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	3.6.5	Bruker Biospin
2	processing	TopSpin	4.3.0	Bruker Biospin
3	chemical shift assignment	NMRFAM-SPARKY		National Magnetic Resonance Facility at Madison
4	peak picking	NMRFAM-SPARKY		National Magnetic Resonance Facility at Madison
8	peak picking	ARTINA		Klukowski, P., Riek, R. and Guntert, P.
5	geometry optimization	TALOS-N	4.12	Y. Shen and A. Bax
6	structure calculation	CYANA	3.98.15	Guntert, Mumenthaler and Wuthrich
7	refinement	Amber	22	Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman