9MES | pdb_00009mes

NMR strucuture of Dengue Virus 2 capsid protein with the deletion of the intrinsically disordered N-terminal region

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-15N NOESY	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 800
2	3D 1H-13C NOESY aliphatic	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 800
3	3D 1H-13C NOESY aromatic	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 800
4	3D HNCO	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 600
5	3D HNCA	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 600
6	3D CBCA(CO)NH	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 600
7	3D HNCACB	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 600
8	3D HBHA(CO)NH	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 600
9	2D 1H-15N HSQC	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 600
10	2D 1H-13C HSQC	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 600
11	3D HCCH-TOCSY	300 uM [U-13C; U-15N] Dengue Virus2 capsid protein with the deletion of the intrinsically disordered N-teminal region., 55 mM sodium phosphate pH 6, 200 mM sodium chloride, 5 % v/v [U-2H] D2O	95% H2O/5% D2O	255 mM	6	1 atm	308	Bruker AVANCE III 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600
2	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	400
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CcpNmr Analysis		CCPN
2	structure calculation	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	refinement	PSVS		Bhattacharya and Montelione
4	peak picking	CcpNmr Analysis		CCPN