9M6M | pdb_00009m6m

Atomic-Level Architecture and Assembly Mechanism of High-order Structures of RIPK1 Fibril Network Revealed by Integrated Structural Biology

SOLID-STATE NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
4	2D CH	4.0 mg/L [2-13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride, 99 % [2H] 99% D2O	100% D2O	0 mM	5.0	1 Pa	279	Bruker 0.7 mm HCN probe 700
2	3D CaNH	4.0 mg/uL [U-100% 13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 0.7 mm HCN probe 700
3	3D coCAcoNH	4.0 mg/uL [U-100% 13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 0.7 mm HCN probe 700
8	3D hNCaCx	4.0 mg/uL [U-100% 13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 3.2 mm HCN E-free probe 700
6	3D hCANCOCX	4.0 mg/uL [U-100% 13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 3.2 mm HCN E-free probe 700
17	2D TEDOR	4.0 mg/L [2-13C] glycerol, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 3.2 mm HCN E-free probe 700
16	2D TEDOR	4.0 mg/L [2-13C] glycerol, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 3.2 mm HCN E-free probe 700
1	2D DARR 50ms	4.0 mg/uL [U-100% 13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	293	Bruker 3.2 mm HCN E-free probe 700
15	2D DARR 200ms	4.0 mg/uL [U-100% 13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	293	Bruker 3.2 mm HCN E-free probe 700
14	2D DARR 500ms	4.0 mg/uL [U-100% 13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	293	Bruker 3.2 mm HCN E-free probe 700
11	2D [2]-13C-DARR 50ms	4.0 mg/L [2-13C] glycerol, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 3.2 mm HCN E-free probe 700
18	2D [2]-13C-DARR 200ms	4.0 mg/L [2-13C] glycerol, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 3.2 mm HCN E-free probe 700
13	2D [2]-13C-DARR 500ms	4.0 mg/L [2-13C] glycerol, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 3.2 mm HCN E-free probe 700
10	2D NCACX	4.0 mg/uL [U-100% 13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 3.2 mm HCN E-free probe 700
9	2D NCOCX	4.0 mg/uL [U-100% 13C] glucose, 1.5 mg/L [U-100% 15N] ammonium chloride	50mM acetic acid buffer PH 5.0	0 mM	5.0	1 Pa	263	Bruker 3.2 mm HCN E-free probe 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	3.2 mm HCN E-free probe	700
2	Bruker	0.7 mm HCN probe	700

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	192
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	data analysis	Sparky		Lee W, Tonelli M, Markley JL.
3	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
4	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
5	chemical shift assignment	Sparky		Lee W, Tonelli M, Markley JL.
6	peak picking	Sparky		Lee W, Tonelli M, Markley JL.

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.