☰ Navigation Tabs
Cryo-EM strucuture of human OAT1 in complex with probenecid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8SDZ
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 5.068 f_angle_d 0.523 f_chiral_restr 0.039 f_bond_d 0.004 f_plane_restr 0.004
Sample human OAT1 in complex with probenecid
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 97785 Reported Resolution (Å) 3.33 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (8SDZ) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 52
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 96000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.1.4 IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC 3.1.4 MODEL FITTING Coot 0.9.8.5 INITIAL EULER ASSIGNMENT cryoSPARC 3.1.4 CLASSIFICATION RELION 4.0 RECONSTRUCTION cryoSPARC 3.1.4 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 8145000