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Human FGFR3 in complex with inhibitor F1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4K33
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293.15 25mM HEPES pH7.5, 1.8-2.0 M LiSO4, 10 Mm CoCl2
Crystal Properties Matthews coefficient Solvent content 3.06 59.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.61 α = 90 b = 71.61 β = 90 c = 153.76 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS PILATUS3 6M 2023-12-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.97791 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 76.88 100 0.044 7.8 5.8 79055
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.43 0.196
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 52.45 74982 3944 99.97 0.22899 0.22783 0.2509 0.235 RANDOM 27.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 1.05 -2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.823 r_long_range_B_refined 8.758 r_long_range_B_other 8.752 r_dihedral_angle_2_deg 7.639 r_dihedral_angle_1_deg 6.095 r_scangle_other 5.753 r_mcangle_other 3.956 r_mcangle_it 3.954 r_scbond_it 3.946 r_scbond_other 3.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.823 r_long_range_B_refined 8.758 r_long_range_B_other 8.752 r_dihedral_angle_2_deg 7.639 r_dihedral_angle_1_deg 6.095 r_scangle_other 5.753 r_mcangle_other 3.956 r_mcangle_it 3.954 r_scbond_it 3.946 r_scbond_other 3.833 r_mcbond_it 2.761 r_mcbond_other 2.754 r_angle_refined_deg 1.969 r_angle_other_deg 0.726 r_chiral_restr 0.138 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2250 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement Coot model building SCALA data scaling PHASER phasing