Solution structure of DRB2 dsRBD2
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 400 uM [U-15N] DRB2D2 | 90% H2O/10% D2O | 200 mM | 6.8 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 2 | 2D 1H-13C HSQC aliphatic | 500 uM [U-100% 13C; U-100% 15N; U-80% 2H] DRB2D2 | 90% H2O/10% D2O | 200 mM | 6.8 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 3 | 3D HNCO | 500 uM [U-100% 13C; U-100% 15N; U-80% 2H] DRB2D2 | 90% H2O/10% D2O | 200 mM | 6.8 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 4 | 3D HN(CA)CO | 500 uM [U-100% 13C; U-100% 15N; U-80% 2H] DRB2D2 | 90% H2O/10% D2O | 200 mM | 6.8 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 5 | 3D HN(COCA)CB | 500 uM [U-100% 13C; U-100% 15N; U-80% 2H] DRB2D2 | 90% H2O/10% D2O | 200 mM | 6.8 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 7 | 3D HNCACB | 500 uM [U-100% 13C; U-100% 15N; U-80% 2H] DRB2D2 | 90% H2O/10% D2O | 200 mM | 6.8 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 6 | 3D 1H-15N NOESY HSQC | 400 uM [U-15N] DRB2D2 | 90% H2O/10% D2O | 250 mM | 6.8 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE NEO | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | CS-RDC-NOE Rosetta | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 5000 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | 4.0 | Bruker Biospin |
| 2 | processing | TopSpin | 4 | Bruker Biospin |
| 3 | peak picking | CcpNmr Analysis Assign | 3.1 | Skinner and Vuister |
| 5 | chemical shift assignment | CcpNmr Analysis Assign | 3.1 | Skinner and Vuister |
| 4 | chemical shift calculation | TALOS-N | Cornilescu, Delaglio and Bax | |
| 6 | structure calculation | CS-RDC-NOE Rosetta | Raman, Langh, Baker | |
| 7 | refinement | CS-RDC-NOE Rosetta | Raman, Langh, Baker | |
