☰ Navigation Tabs
Parkinson disease protein 7 (DJ-1) and Alpha-synuclein (Alpha-syn) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7C62
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.2 M Sodium iodide, 20% w/v Polyethylene glycol 3,350, pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.91 57.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.285 α = 89.89 b = 75.274 β = 89.92 c = 75.39 γ = 60.04
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2024-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.979 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.53 50 98.6 0.96 1.2 3.1 5769
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4.53 4.61 0.947
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4.58 7.66 5769 326 75.39 0.14866 0.14495 0.1932 0.22247 0.2903 RANDOM 63.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -17.08 8.8 2.54 23.63 -22.21 -6.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.422 r_long_range_B_refined 25.536 r_dihedral_angle_4_deg 20.889 r_dihedral_angle_3_deg 17.244 r_mcangle_it 13.409 r_dihedral_angle_1_deg 7.918 r_mcbond_it 7.822 r_scbond_it 7.201 r_angle_refined_deg 1.451 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.422 r_long_range_B_refined 25.536 r_dihedral_angle_4_deg 20.889 r_dihedral_angle_3_deg 17.244 r_mcangle_it 13.409 r_dihedral_angle_1_deg 7.918 r_mcbond_it 7.822 r_scbond_it 7.201 r_angle_refined_deg 1.451 r_chiral_restr 0.098 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8885 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data scaling HKL-2000 data reduction