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T200H Carbonic Anhydrase II pH 7.8 0 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LUW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293.15 1.3M of Sodium Citrate, 50mM Tris-HCl pH 7.8
Crystal Properties Matthews coefficient Solvent content 2.07 40.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.005 α = 90 b = 41.242 β = 104.524 c = 72.482 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2024-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97933 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.229 50 99.4 0.073 0.079 0.03 0.998 23.39 6.3 69635
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.229 1.25 92.2 0.42 0.473 0.215 0.899 2.538 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.229 28.955 69618 3533 99.342 0.151 0.1493 0.1576 0.1752 0.1826 12.735
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.009 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.043 r_dihedral_angle_3_deg 11.342 r_lrange_it 10.378 r_lrange_other 9.963 r_scangle_it 7.446 r_scangle_other 7.444 r_dihedral_angle_2_deg 7.017 r_dihedral_angle_1_deg 7.015 r_mcangle_other 5.716 r_mcangle_it 5.702
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.043 r_dihedral_angle_3_deg 11.342 r_lrange_it 10.378 r_lrange_other 9.963 r_scangle_it 7.446 r_scangle_other 7.444 r_dihedral_angle_2_deg 7.017 r_dihedral_angle_1_deg 7.015 r_mcangle_other 5.716 r_mcangle_it 5.702 r_scbond_it 5.251 r_scbond_other 5.25 r_mcbond_it 4.079 r_rigid_bond_restr 4.075 r_mcbond_other 4.04 r_angle_refined_deg 1.956 r_angle_other_deg 0.689 r_nbd_other 0.25 r_symmetry_nbd_refined 0.205 r_nbd_refined 0.202 r_symmetry_nbd_other 0.197 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.14 r_symmetry_xyhbond_nbd_refined 0.13 r_chiral_restr 0.106 r_symmetry_nbtor_other 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2051 Nucleic Acid Atoms Solvent Atoms 261 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing