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Structure of #2-911 Fab in complex with MEDI8852 Fab
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5JW3 experimental model PDB 2QHR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Bis-Tris (pH5.5), 13% PEG3350, 1% Tacsimate, 10 mM TCEP
Crystal Properties Matthews coefficient Solvent content 2.99 58.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.283 α = 90 b = 151.111 β = 90 c = 176.368 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 PIXEL DECTRIS PILATUS 6M 2024-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.0 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.374 48.43 88.8 0.038 0.999 12.72 2 91583
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.374 2.459 0.469 0.748
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5JW3,2QHR 2.374 48.43 91583 4705 99.885 0.203 0.2 0.204 0.2543 0.2568 52.519
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.726 3.532 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.467 r_dihedral_angle_6_deg 13.801 r_lrange_it 12.741 r_lrange_other 12.741 r_dihedral_angle_2_deg 10.987 r_scangle_it 8.98 r_scangle_other 8.98 r_mcangle_other 7.815 r_mcangle_it 7.814 r_dihedral_angle_1_deg 7.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.467 r_dihedral_angle_6_deg 13.801 r_lrange_it 12.741 r_lrange_other 12.741 r_dihedral_angle_2_deg 10.987 r_scangle_it 8.98 r_scangle_other 8.98 r_mcangle_other 7.815 r_mcangle_it 7.814 r_dihedral_angle_1_deg 7.235 r_scbond_it 5.985 r_scbond_other 5.975 r_mcbond_it 5.333 r_mcbond_other 5.325 r_angle_refined_deg 1.566 r_angle_other_deg 0.524 r_symmetry_xyhbond_nbd_refined 0.258 r_symmetry_nbd_other 0.207 r_nbd_refined 0.193 r_nbtor_refined 0.183 r_nbd_other 0.15 r_symmetry_nbd_refined 0.14 r_xyhbond_nbd_refined 0.138 r_symmetry_nbtor_other 0.089 r_symmetry_xyhbond_nbd_other 0.076 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13180 Nucleic Acid Atoms Solvent Atoms 278 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing