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Crystal structure of GH9l Inulin fructotransferases (IFTase)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 M lithium sulfate monohydrate, 0.1 M Tris (pH 8.5),and 25% (w/v) polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.42 49.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 167.68 α = 90 b = 167.68 β = 90 c = 85.66 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2014-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 19.95 98.5 0.993 9.58 4.7 73905
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.21 0.512
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.15 9.62 73905 3724 99.038 0.206 0.205 0.2072 0.233 0.2377 21.252
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.026 0.013 0.026 -0.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.369 r_dihedral_angle_4_deg 20.367 r_dihedral_angle_3_deg 14.791 r_dihedral_angle_1_deg 8.044 r_lrange_other 4.697 r_lrange_it 4.696 r_scangle_it 3.966 r_scangle_other 3.966 r_scbond_it 3.117 r_scbond_other 3.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.369 r_dihedral_angle_4_deg 20.367 r_dihedral_angle_3_deg 14.791 r_dihedral_angle_1_deg 8.044 r_lrange_other 4.697 r_lrange_it 4.696 r_scangle_it 3.966 r_scangle_other 3.966 r_scbond_it 3.117 r_scbond_other 3.116 r_mcangle_it 2.737 r_mcangle_other 2.737 r_angle_other_deg 2.412 r_mcbond_it 2.03 r_mcbond_other 2.029 r_angle_refined_deg 1.863 r_nbd_other 0.257 r_symmetry_nbd_other 0.243 r_nbd_refined 0.205 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.139 r_symmetry_nbd_refined 0.138 r_symmetry_nbtor_other 0.09 r_symmetry_xyhbond_nbd_refined 0.082 r_bond_other_d 0.036 r_symmetry_xyhbond_nbd_other 0.035 r_bond_refined_d 0.016 r_gen_planes_other 0.014 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9080 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement RESOLVE model building HKL-3000 data scaling HKL-3000 data reduction RESOLVE phasing