9ILL | pdb_00009ill

monomeric SarA-E89Q in complex with DNA

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-13C HSQC	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 900
2	2D 1H-15N HSQC	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 900
3	2D 1H-1H NOESY XF	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 900
4	3D HN(CO)CA	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 600
5	3D CBCA(CO)NH	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 600
6	3D HNCA	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 600
9	3D CCHCOSY	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 600
8	3D CCHTOCSY	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 600
7	3D HBHA(CO)NH	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 600
12	3D HCCH-COSY	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 600
11	3D 1H-15N NOESY	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 900
10	3D 1H-13C NOESY	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 900
13	3D 1H-13C NOESY aromatic	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 900
14	3D XFCNOESY	10 mM sodium phosphate, 10 mM NaCl, 90 % H2O, 10 % [U-99% 2H] D2O, 0.01 % DSS, 0.01 % sodium azide, 5 % EDTA-free Protease Inhibitor Cocktail	90% H2O/10% D2O	20 mM	7.0	1 atm	308	Bruker AVANCE 900

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	900
2	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	NMRView		Johnson, One Moon Scientific
2	structure calculation	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3	structure calculation	DYANA		Guntert, Braun and Wuthrich
4	peak picking	NMRView		Johnson, One Moon Scientific
5	data analysis	TALOS-N		Yang Shen, Ad Bax
6	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman