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A-SPECTRIN SH3 DOMAIN V9L, A11V, M25V, V46F, V58L MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SHG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 2M Ammonium Sulfate and 0.1M Bis-Tris
Crystal Properties Matthews coefficient Solvent content 2.57 52.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.021 α = 90 b = 36.562 β = 90 c = 64.926 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 6M 2022-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97918 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.013 32.463 100 0.059 0.018 0.998 21.7 12.4 40408
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.013 1.03 100 1.689 0.51 0.649 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.013 32.463 40406 2007 99.993 0.163 0.1629 0.1705 0.174 0.1785 18.514
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.518 0.008 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.557 r_rigid_bond_restr 31.377 r_dihedral_angle_4_deg 18.123 r_dihedral_angle_3_deg 12.636 r_scbond_it 7.917 r_dihedral_angle_1_deg 7.184 r_scangle_it 7.125 r_scbond_other 6.475 r_lrange_it 6.011 r_scangle_other 5.757
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.557 r_rigid_bond_restr 31.377 r_dihedral_angle_4_deg 18.123 r_dihedral_angle_3_deg 12.636 r_scbond_it 7.917 r_dihedral_angle_1_deg 7.184 r_scangle_it 7.125 r_scbond_other 6.475 r_lrange_it 6.011 r_scangle_other 5.757 r_lrange_other 5.654 r_mcangle_other 3.582 r_mcangle_it 3.464 r_mcbond_it 3.041 r_angle_refined_deg 3.008 r_mcbond_other 2.918 r_angle_other_deg 1.652 r_symmetry_nbd_refined 0.483 r_nbd_other 0.329 r_nbd_refined 0.269 r_xyhbond_nbd_refined 0.238 r_symmetry_xyhbond_nbd_refined 0.231 r_symmetry_nbd_other 0.21 r_nbtor_refined 0.182 r_xyhbond_nbd_other 0.148 r_chiral_restr 0.12 r_symmetry_nbtor_other 0.088 r_bond_refined_d 0.033 r_gen_planes_refined 0.014 r_bond_other_d 0.009 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 525 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing