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CD177 extracellular domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 20% w/v PEG 3350, 0.20 M ammonium nitrate
Crystal Properties Matthews coefficient Solvent content 3.03 59.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 192.99 α = 90 b = 192.99 β = 90 c = 71.808 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2018-11-28 M SINGLE WAVELENGTH 2 1 x-ray 45 PIXEL DECTRIS PILATUS 12M 2019-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 1.0718 Diamond I03 2 SYNCHROTRON DIAMOND BEAMLINE I23 2.7552 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 96.92 100 0.994 4.2 7 27651
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 0.363
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 66.064 27364 1296 99.945 0.225 0.2236 0.2235 0.2585 0.2587 RANDOM 101.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.055 0.11 -0.357
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.894 r_dihedral_angle_6_deg 15.606 r_lrange_it 8.554 r_dihedral_angle_1_deg 8.516 r_dihedral_angle_2_deg 7.574 r_scangle_it 5.512 r_mcangle_it 4.682 r_scbond_it 3.39 r_mcbond_it 2.737 r_angle_refined_deg 2.043
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.894 r_dihedral_angle_6_deg 15.606 r_lrange_it 8.554 r_dihedral_angle_1_deg 8.516 r_dihedral_angle_2_deg 7.574 r_scangle_it 5.512 r_mcangle_it 4.682 r_scbond_it 3.39 r_mcbond_it 2.737 r_angle_refined_deg 2.043 r_nbtor_refined 0.269 r_symmetry_nbd_refined 0.18 r_nbd_refined 0.171 r_chiral_restr 0.146 r_ncsr_local_group_1 0.134 r_xyhbond_nbd_refined 0.109 r_symmetry_xyhbond_nbd_refined 0.033 r_bond_refined_d 0.007 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5592 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling HKL2Map phasing XDS data reduction Coot model building