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OleP triple mutant F84Q/S240A/V291G in complex with LCA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MNS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 4.4 M sodium formate
Crystal Properties Matthews coefficient Solvent content 3 58.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 248.041 α = 90 b = 106.588 β = 131.27 c = 163.731 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 123.067 85 0.998 11.9 3.7 86958
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 0.72
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 53.74 82607 4376 98.63 0.18888 0.1873 0.1944 0.21857 0.2208 RANDOM 62.158
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.13 -0.29 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.383 r_dihedral_angle_4_deg 21.424 r_dihedral_angle_3_deg 17.897 r_dihedral_angle_1_deg 6.81 r_long_range_B_refined 5.832 r_long_range_B_other 5.827 r_scangle_other 3.707 r_mcangle_it 3.018 r_mcangle_other 3.018 r_scbond_it 2.536
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.383 r_dihedral_angle_4_deg 21.424 r_dihedral_angle_3_deg 17.897 r_dihedral_angle_1_deg 6.81 r_long_range_B_refined 5.832 r_long_range_B_other 5.827 r_scangle_other 3.707 r_mcangle_it 3.018 r_mcangle_other 3.018 r_scbond_it 2.536 r_scbond_other 2.389 r_mcbond_it 1.94 r_mcbond_other 1.94 r_angle_refined_deg 1.894 r_angle_other_deg 1.319 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18510 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 589
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing