9I84 | pdb_00009i84

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6QZ6

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		279	1.8 M triammonium citrate

Crystal Properties
Matthews coefficient	Solvent content
2.1	42

Symmetry
Space Group	P 65 2 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315r		2010-06-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	0.97625	ESRF	ID23-1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	54.54	96.9	0.104	0.036	14.4	8.2		11265

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.07	83.8		0.455	0.215	4.1	4.5

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.01	20.001	11055	544	96.821	0.207	0.2061	0.2155	0.2223	0.2294	44.298

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.832	0.416		0.832		-2.7

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	16.493
r_dihedral_angle_6_deg	13.534
r_lrange_other	12.134
r_lrange_it	12.128
r_scangle_it	8.375
r_scangle_other	8.37
r_dihedral_angle_2_deg	7.171
r_mcangle_it	5.998
r_mcangle_other	5.997
r_scbond_it	5.489

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	16.493
r_dihedral_angle_6_deg	13.534
r_lrange_other	12.134
r_lrange_it	12.128
r_scangle_it	8.375
r_scangle_other	8.37
r_dihedral_angle_2_deg	7.171
r_mcangle_it	5.998
r_mcangle_other	5.997
r_scbond_it	5.489
r_scbond_other	5.484
r_dihedral_angle_1_deg	5.288
r_mcbond_it	4.24
r_mcbond_other	4.224
r_angle_refined_deg	1.685
r_angle_other_deg	0.567
r_nbd_refined	0.241
r_symmetry_xyhbond_nbd_refined	0.206
r_nbtor_refined	0.192
r_symmetry_nbd_other	0.19
r_xyhbond_nbd_refined	0.176
r_nbd_other	0.171
r_symmetry_nbd_refined	0.144
r_chiral_restr	0.081
r_symmetry_nbtor_other	0.077
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1182
Nucleic Acid Atoms
Solvent Atoms	50
Heterogen Atoms	33

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.