☰ Navigation Tabs
14-3-3sigma binding to the ERa peptide and compound 28
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.72 54.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.96 α = 90 b = 113.103 β = 90 c = 62.965 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2024-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873128 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 66.89 100 0.999 16.8 11.3 72898
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 0.726 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 45.89 69191 3678 99.93 0.15162 0.14996 0.1647 0.18217 0.1895 RANDOM 20.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.89 3.07 -2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.194 r_long_range_B_refined 17.369 r_long_range_B_other 16.572 r_scangle_other 15.284 r_dihedral_angle_3_deg 14.306 r_scbond_it 11.642 r_scbond_other 11.64 r_mcangle_it 9.04 r_mcangle_other 9.038 r_mcbond_it 6.957
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.194 r_long_range_B_refined 17.369 r_long_range_B_other 16.572 r_scangle_other 15.284 r_dihedral_angle_3_deg 14.306 r_scbond_it 11.642 r_scbond_other 11.64 r_mcangle_it 9.04 r_mcangle_other 9.038 r_mcbond_it 6.957 r_mcbond_other 6.955 r_rigid_bond_restr 6.57 r_dihedral_angle_1_deg 4.674 r_angle_refined_deg 1.499 r_angle_other_deg 0.577 r_chiral_restr 0.079 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1899 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 32
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing