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Galectin-1 in Complex with Methyl 3'-fluoro-N-acetyllactosaminide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3T2T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 291 0.1M Tris-Cl, pH8, 0.2M lithium sulfate, 30% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.42 49.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.902 α = 90 b = 58.167 β = 90 c = 111.727 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 41.7 98.3 0.134 0.998 8.61 5.69 27650 36.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.9 95.2 2.293 0.541 0.71 5.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.794 41.7 27650 1383 98.31 0.257 0.2605 0.3071 0.3048 42.13
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 32.4107192 -21.9612345 -10.4494847
RMS Deviations Key Refinement Restraint Deviation s_dihedral_angle_6_deg 14.6574 s_dihedral_angle_3_deg 11.3953 s_dihedral_angle_1_deg 8.0004 s_dihedral_angle_2_deg 3.4793 s_angle_nonh_deg 1.7391 s_nbtor 0.2232 s_nbd 0.2143 s_symmetry_nbd 0.2092 s_hbond_nbd 0.1529 s_symmetry_hbond_nbd 0.1128
RMS Deviations Key Refinement Restraint Deviation s_dihedral_angle_6_deg 14.6574 s_dihedral_angle_3_deg 11.3953 s_dihedral_angle_1_deg 8.0004 s_dihedral_angle_2_deg 3.4793 s_angle_nonh_deg 1.7391 s_nbtor 0.2232 s_nbd 0.2143 s_symmetry_nbd 0.2092 s_hbond_nbd 0.1529 s_symmetry_hbond_nbd 0.1128 s_chiral_restr 0.0764 s_bond_nonh_d 0.0093 s_planes 0.0077
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2062 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 65
Software Software Software Name Purpose Servalcat refinement XDS data reduction XDS data scaling MOLREP phasing