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Branching Sucrase BRS-B in complex with Sucrose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TTQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 285 0.1M SPG Buffer pH 7, 20% PEG 1500
Crystal Properties Matthews coefficient Solvent content 4.08 69.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 255.133 α = 90 b = 255.133 β = 90 c = 344.915 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97929 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 48.63 98.7 0.982 4.4 3.5 76886
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.27 0.734 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.1 48.262 76881 3803 98.502 0.194 0.1925 0.1957 0.2253 0.2274 65.054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.375 0.688 1.375 -4.462
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.558 r_dihedral_angle_6_deg 13.132 r_lrange_it 11.053 r_lrange_other 11.053 r_dihedral_angle_1_deg 7.326 r_scangle_it 6.704 r_scangle_other 6.704 r_mcangle_it 6.276 r_mcangle_other 6.276 r_dihedral_angle_2_deg 5.672
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.558 r_dihedral_angle_6_deg 13.132 r_lrange_it 11.053 r_lrange_other 11.053 r_dihedral_angle_1_deg 7.326 r_scangle_it 6.704 r_scangle_other 6.704 r_mcangle_it 6.276 r_mcangle_other 6.276 r_dihedral_angle_2_deg 5.672 r_scbond_it 4.02 r_scbond_other 4.02 r_mcbond_it 3.878 r_mcbond_other 3.878 r_angle_refined_deg 1.226 r_angle_other_deg 0.471 r_symmetry_nbd_other 0.215 r_nbd_refined 0.213 r_nbd_other 0.188 r_symmetry_xyhbond_nbd_refined 0.186 r_nbtor_refined 0.18 r_symmetry_nbd_refined 0.161 r_xyhbond_nbd_refined 0.15 r_ncsr_local_group_1 0.105 r_symmetry_xyhbond_nbd_other 0.1 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.061 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18161 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 301
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing